species:   Drmel
pid:       MI0017754
parent:    dme-mir-4968
paralog:   
locus:     NT_037436.4:11552539-11552693
matures:   ['UAGCUGCCACGGUUUGUUGCUU', 'GCAACAGCAGCAGCAGCAGA']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NT_037436.4:11552539-11552693

0 out of bounds
35 alignments
35 proper strand
27 stranded perfect matches

                                              ***********************                    *********************                                             
UUUUCCUCAGAGCCGCGACUGCUGGCGUGUUAUUGUUGCUGUUGCAGCUAGCUGCCACGGUUUGUUGCUUCACUGAUUACGCGCAAUGCAGCAACAGCAGCAGCAGCAGAAGCAACAGCAACUAACUGCAGAGGAGCAAUAGCAGCUGAGAGUUC
.....(((..(((.((...((((....(((....(((((((((((..((.(((((..(.(((.((((((.((.((........)).)).))))))))).)..)))))))..))))))))))).....)))....))))...)).)))..)))...
------------------------------------------------UAGCUGCCACGGUUUGUUGCUU------------------------------------------------------------------------------------- l=22 a=5 c
------------------------------------------------------------------------------------------GCAACAGCAGCAGCAGCAGA--------------------------------------------- l=20 a=0 c*
------------------------------------------------UAGCUGCCACGGUUUGUUGCU-------------------------------------------------------------------------------------- l=21 a=9 ma
-------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAGA--------------------------------------------- l=19 a=0 ma*

----------------------------------------------------------------------------------------CAGCAACAGCAGCAGCAGCAGA--------------------------------------------- l=22 a=2 
-------------------------------------------------AGCUGCCgCGGUUUGUUGCUUCA----------------------------------------------------------------------------------- l=23 a=2 
------------------------------------------------UAGCUGCCACGGUUUGUUGC--------------------------------------------------------------------------------------- l=20 a=1 
------------------------------------------------UAGCUGCCACGGUUUGUUGCU-------------------------------------------------------------------------------------- l=21 a=9 (ma)
------------------------------------------------UAGCUGCCACGGUUUGUUGCa-------------------------------------------------------------------------------------- l=21 a=1 
------------------------------------------------UAGCUGCCACGGUUUGUUGCUU------------------------------------------------------------------------------------- l=22 a=5 (c)
------------------------------------------------UAGCUGCCACGGUUUGUUGCUUC------------------------------------------------------------------------------------ l=23 a=5 
------------------------------------------------UAGCUGCCACGGUUUGUUGCUUCA----------------------------------------------------------------------------------- l=24 a=4 
------------------------------------------------UAGCUGCCgCGGUUUGUUGCUUCA----------------------------------------------------------------------------------- l=24 a=4 
------------------------------------------------UgGCUGCCACGGUUUGUUGCUUCA----------------------------------------------------------------------------------- l=24 a=1 
------------------------------------------------UAGCUGCCACGGUUUGUUGCUUCAC---------------------------------------------------------------------------------- l=25 a=1 

mb-01111
ax-1011011
ku-01
ss-111111111100
fn-111
